Credentialed Access Repository

Table of Contents

1. Introduction
2. Use Cases
3. To-do list
4. References

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1. Introduction

Welcome to the credentialed access repository! Here you will find code that interacts with anonymized patient-level data. This is the home of clinical use cases.

Critical note, please read

To honor your credentialed health data license agreement with PhysioNet, please clear all patient-level data from cell outputs or other places where patient-level data may hide BEFORE you push to this or any other repository. If you see any patient-level data in this repository, please immediately clear it out if you can or contact Tim McLerran at tmclerran@gmail.com for help. Each of us is individually responsible to protect the data, and as a community we can help each other keep that commitment.

Note that this working group has no affiliation with PhysioNet beyond our immense gratitude for the resources they provide.

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2. Use Cases

Use Case 1: Recommendation system for plan items in a physician’s note
Use Case 2: Predict patient problems based on various inputs including presciptions, other problems, etc.

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3. To Do

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2. References

References associated with MIMIC-III data:

Johnson, A., Pollard, T., & Mark, R. (2016). MIMIC-III Clinical Database (version 1.4). PhysioNet. https://doi.org/10.13026/C2XW26.

Johnson, A. E. W., Pollard, T. J., Shen, L., Lehman, L. H., Feng, M., Ghassemi, M., Moody, B., Szolovits, P., Celi, L. A., & Mark, R. G. (2016). MIMIC-III, a freely accessible critical care database. Scientific Data, 3, 160035.

Goldberger, A., Amaral, L., Glass, L., Hausdorff, J., Ivanov, P. C., Mark, R., … & Stanley, H. E. (2000). PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.